S3 plotting method for diffnet objects.
# S3 method for diffnet plot( x, y = NULL, t = 1, vertex.color = c(adopt = "steelblue", noadopt = "white"), vertex.size = "degree", main = "Diffusion network in time %d", minmax.relative.size = getOption("diffnet.minmax.relative.size", c(0.01, 0.04)), ... )
x | An object of class |
---|---|
y | Ignored. |
t | Integer scalar indicating the time slice to plot. |
vertex.color | Character scalar/vector. Color of the vertices. |
vertex.size | Either a numeric scalar or vector of size \(n\), or any of the following values: "indegree", "degree", or "outdegree" (see details). |
main | Character. A title template to be passed to sprintf. |
minmax.relative.size | Passed to |
... | Further arguments passed to |
A matrix with the coordinates of the vertices.
Plotting is done via the function plot.igraph
.
When vertex.size
is either of "degree"
, "indegree"
, or
"outdegree"
, vertex.size
will be replace with dgr(.,cmode = )
so that the vertex size reflects the desired degree.
The argument minmax.relative.size
is passed to rescale_vertex_igraph
which adjusts vertex.size
so that the largest and smallest vertices
have a relative size of minmax.relative.size[2]
and
minmax.relative.size[1]
respectively with respect to the x-axis.
Other diffnet methods:
%*%()
,
as.array.diffnet()
,
c.diffnet()
,
diffnet-arithmetic
,
diffnet-class
,
diffnet_index
,
summary.diffnet()