Another way of visualizing diffusion
plot_diffnet2(graph, ...) # S3 method for diffnet plot_diffnet2(graph, toa, slice = nslices(graph), ...) # S3 method for default plot_diffnet2( graph, toa, pers = min(toa, na.rm = TRUE):max(toa, na.rm = TRUE), color.ramp = grDevices::colorRamp(viridisLite::magma(20)), layout = NULL, key.width = 0.1, key.args = list(), main = "Diffusion dynamics", add.map = NULL, diffmap.args = list(kde2d.args = list(n = 100)), diffmap.alpha = 0.5, include.white = "first", vertex.size = "degree", minmax.relative.size = getOption("diffnet.minmax.relative.size", c(0.01, 0.04)), no.graph = FALSE, ... )
graph | Any class of accepted graph format (see |
---|---|
... | Further arguments passed to |
toa | Integer vector of length \(n\) with the times of adoption. |
slice | Integer scalar. Number of slice to use as baseline for drawing the graph. |
pers | Integer vector of length \(T\) indicating the time periods of the data. |
color.ramp | A function as returned by |
layout | Passed to |
key.width | Numeric scalar. Sets the proportion of the plot (x-axis) that the key uses. |
key.args | List. Further arguments to be passed to |
main | Character scalar. Title of the graph. |
add.map | Character scalar. When |
diffmap.args | List. If |
diffmap.alpha | Numeric scalar between [0,1]. Alpha level for the map. |
include.white | Character scalar. Includes white in the color palette used in the map.
When |
vertex.size | Either a numeric scalar or vector of size \(n\), or any of the following values: "indegree", "degree", or "outdegree" (see details). |
minmax.relative.size | Passed to |
no.graph | Logical scala. When |
A list with the following elements
A numeric matrix with vertex coordinates.
A character vector with computed colors for each vertex.
The value passed to plot_diffnet2
.
A character vector with assigned shapes.
A numeric vector with vertices sizes
If add.map=TRUE
, the returned values from diffmap
Plotting is done via the function plot.igraph
.
When vertex.size
is either of "degree"
, "indegree"
, or
"outdegree"
, vertex.size
will be replace with dgr(.,cmode = )
so that the vertex size reflects the desired degree.
The argument minmax.relative.size
is passed to rescale_vertex_igraph
which adjusts vertex.size
so that the largest and smallest vertices
have a relative size of minmax.relative.size[2]
and
minmax.relative.size[1]
respectively with respect to the x-axis.
If key.width<=0
then no key is created.
By defult, the function passes the following values to plot.igraph
:
vertex.label
equals to ""
vertex.frame.color
equals to "white"
add
equals to TRUE
rescale
equals to FALSE
vertex.size
equals to rescale.fun(vertex.size)
Other visualizations:
dgr()
,
diffusionMap()
,
drawColorKey()
,
grid_distribution()
,
hazard_rate()
,
plot_adopters()
,
plot_diffnet()
,
plot_infectsuscep()
,
plot_threshold()
,
rescale_vertex_igraph()